Chemspider

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ChemSpider is a freely accessible online database of chemicals owned by the Royal Society of Chemistry. The database sources include: [8]. The ChemSpider database can be updated with user contributions including chemical structure deposition, spectra deposition and user curation. This is a crowdsourcing approach to develop an online chemistry database. Crowdsourced based curation of the data has produced a dictionary of chemical names associated with chemical structures that has been used in text-mining applications of the biomedical and chemical literature. The ChemSpider database has been used in combination with text mining as the basis of chemistry document markup. ChemMantis, [14] the Chemistry Markup And Nomenclature Transformation Integrated System uses algorithms to identify and extract chemical names from documents and web pages and converts the chemical names to chemical structures using name-to-structure conversion algorithms and dictionary look-ups in the ChemSpider database.

Chemspider

For several months now we have been working hard to rebuild ChemSpider from the ground up. This is redeveloping the technical implementation of the site, as well as a complete reassessment of the website; how it looks, how it works and the data that we present. We hope this new ChemSpider site, while not a complete copy of the features in the old site, will provide access to all the information that you need in a more intuitive and user-friendly way. While we continue to refine the new site we have made a preview version of the new interface available as Beta. ChemSpider only contains the data for the first 5 million ChemSpider records for the moment. Once we are happy that the new site is ready it will replace the current ChemSpider site. This allows us to provide you with the ability to try improved design, provide feedback, and should you need to still switch back to the familiar interface. We are still adding functionality and tweaking the data, but your feedback will help us to validate where we have made improvements and where we still need to do more. Some record tabs which were based on out-of-date or limited availability data have been retired. Other features like structure searching are yet to be added to the new website as we look for a solution to replace the one currently used on ChemSpider. Please try it out and decide for yourself. It means that things might change on the beta. We are also working on how we process the data that is loaded in the site and so sometimes the data might change as we reload the data. Comments Off on See the future of ChemSpider.

Other features like structure searching are yet chemspider be added to the new website as we look for a solution to replace the one currently used on ChemSpider. This is redeveloping the technical implementation of the site, chemspider, as well as a complete reassessment of the website; how it looks, chemspider, how it works and the data that we present.

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ChemSpider is a powerful tool for finding chemical information: we have lots of different types of information and a rich selection of search tools. We have tried to make the database as intuitive to use as possible, but please bear in mind that sometimes ChemSpider might work differently as compared to other tools that you might use. On this help page we will help you navigate your way to a solution. Please browse the Help topics listed below which describes how to find information in ChemSpider. If you have a specific problem you may also find the Frequently Asked Questions page helpful. Also watch out for the symbol. It is derived from a structural representation of that substance in a way designed to be independent of the way that the structure was drawn therefore ensuring that a compound will always produce the same identifier. InChI is fast becoming adopted by cheminformaticians around the world as a flexible structure exchange format. SMILES contains the same information as an extended connection table and is very compact relative to other methods of representing chemical structures. We use the name infobox to describe the containers for the information that is displayed in a ChemSpider record.

Chemspider

Select the More Searches menu from the top toolbar and choose Structure Search from the dropdown menu. The Draw Structure tab may be selected default setting but this tab may not not be your current default setting. Example showing how you can use the Convert structure option to generate an editable structure from a name. Simple Structure Advanced History. Advanced Search Advanced searching is one of the best ways of finding information about a compound or helping to identify an unknown. With this type of search from the Advanced Search page , you can search by many different kinds of properties like molecular formula or molecular weight, physicochemical properties like melting point, identifiers like trade or systematic names, or structure. Search by Tags You can also combine any of these searches in powerful ways, such as searching by substructure and molecular formula, or melting point and molecular weight. Search by Structure This option allows you to perform a structure search in combination with other searches. Please read Structure Search Basics for how to enter in a new structure, convert an identifier, or upload a structure. The Substructure and Similarity Search sections will tell you more about these kinds of search.

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At present the filtering described only applies to new data coming into ChemSpider. This is redeveloping the technical implementation of the site, as well as a complete reassessment of the website; how it looks, how it works and the data that we present. These checks allow us to remove the most common types of errors before they are added to the site. Comments Off on Webinar 3: Chemistry data: Challenges and opportunities. Comments Off on ChemSpider Mobile app. Unfortunately, once transferred to the simplified but universal mol format, some of those features are lost, resulting in nonsensical structures. As a result we have a rule of thumb that excludes structures containing more than two undefined stereocentres. See the future of ChemSpider 18 Jan While we continue to refine the new site we have made a preview version of the new interface available as Beta. Charge imbalance In general, entries in ChemSpider should represent a real-world, isolable compound. ISBN As a first pass, we compared synonyms to molecular formulae to identify records missing key elements. Formats and identifiers Submitted files can be in one of several different formats. This work included amino acids, nucleic acids, and pharmaceutically acceptable salts.

Link based search: Taxol. ChemSpider is a free access service providing a structure centric community for chemists. Providing access to millions of chemical structures and integration to a multitude of other online services, ChemSpider is the richest single source of structure-based chemistry information.

These synonyms have additional metadata including language labels and flags identifying what type of synonym they are e. Comments Off on ChemSpider data cleanup. By sharped. Webinar 3: Chemistry data: Challenges and opportunities. These procedures may be original works, but they are more often based on literature reactions. Although structure D is unchanged, this representation has other problems: incorrect valence on Fe and no representation of the aromaticity of the cyclopentadienyl ligands. In previous posts , we have discussed the automated workflow we use to check new incoming data for structure and synonym errors. Please note that we cannot reply to you unless you send us an email. RadioButtonList field Ja, jeg fant det Nei, jeg fant det ikke. See how this site uses Cookies. Ferrocene is a classic example of this problem and illustrates several of the issues we have to consider. Reduction - Replacement. The original code is also available from GitHub. As a first pass, we compared synonyms to molecular formulae to identify records missing key elements.